Looking for a healthy muffin recipe that’s easy to make and packed with flavor? These Greek Yogurt Muffins are naturally sweetened, made with whole wheat flour, and have a soft, fluffy texture.

Why You’ll Love These Healthy Muffins

  • No refined sugar – naturally sweetened with honey & raisins.
  • High in protein – thanks to Greek yogurt.
  • Whole wheat + oats = fiber-rich and filling.

healthy greek yogurt muffins

Ingredients for Greek Yogurt Muffins (12 muffins)

  • 1 ½ cups whole wheat flour
  • ½ cup rolled oats
  • 1 tsp baking powder
  • ½ tsp baking soda
  • ½ tsp cinnamon
  • ½ cup Greek yogurt or kefir (plain, full-fat or low-fat)
  • ¼ cup maple syrup or honey
  • ¼ cup coconut oil or melted butter
  • 2 eggs
  • 1 tsp vanilla extract
  • ½ cup milk (any type)
  • ¾ cup raisins (soaked in warm water for 10 minutes, then drained)

Step-by-Step Instructions

  • Preheat oven to 350°F (175°C) and line a muffin tin.
  • In a bowl, whisk together flour, oats, baking powder, baking soda, and cinnamon.
  • In another bowl, mix Greek yogurt, maple syrup, coconut oil, eggs, vanilla, and milk until smooth.
  • Combine the wet and dry ingredients, stirring gently.
  • Fold in the raisins (drain them first if they were soaked).
  • Divide the batter into muffin cups, filling each about ¾ full.
  • Bake for 18-22 minutes or until a toothpick comes out clean.
  • Let cool for 5 minutes before removing from the pan.

Substitutions for Greek Yogurt Muffins

  • Greek Yogurt: Can replace with kefir or regular yogurt.
  • Whole Wheat Flour: Can use all-purpose or a GF blend.
  • Raisins: Swap for chocolate chips or dried cranberries.
  • Coconut Oil: Use melted butter or olive oil instead.
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Tempting Chocolate Muffins

Benefits of Greek Yogurt Muffins

These Greek Yogurt Muffins aren’t just delicious—they’re packed with health benefits, making them a great choice for breakfast, snacks, or lunchboxes.

 Naturally Sweetened (No Refined Sugar!)

  • Sweetened with honey and raisins, these muffins skip processed sugar while still being deliciously sweet.
  • Perfect for kids and adults looking for a healthier treat.

 Whole Wheat & Oats = More Fiber

  • Made with whole wheat flour and oats for extra fiber, which helps with digestion and keeps energy levels steady.
  • Great for a filling breakfast or a healthy snack.

 Soft, Moist, and Kid-Approved

  • The combination of Greek yogurt and coconut oil makes these muffins extra soft and fluffy.
  • Kids love the natural sweetness of raisins—no need for extra sugar!

 Easy to Make & Freezer-Friendly

  • One-bowl recipe = minimal mess and quick prep.
  • Make a batch and freeze them for up to 3 months—just reheat and enjoy!
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Expert Tips for the Best Greek Yogurt Muffins

  • Soak Raisins for Extra Moisture – Soak in warm water (or juice) for 10 minutes to keep them plump.
  • Don’t Overmix – Stir just until combined to keep muffins light and fluffy.
  • Use Full-Fat Greek Yogurt – Adds richness and moisture; if using low-fat, add a little oil.
  • Toss Raisins in Flour – Prevents them from sinking in the batter.
  • Fill Muffin Cups ¾ Full – Ensures the perfect dome shape.
  • Bake at 350°F (175°C) for 18-22 Minutes – Use the toothpick test for doneness.
  • Let Muffins Cool – Rest for 5 minutes in the pan before transferring to a wire rack.
  • Store & Freeze – Keep in an airtight container for 3 days or freeze for up to 3 months.

FAQ

Q1. Can I make these Greek yogurt muffins without eggs?

Yes! You can substitute each egg with:

  • 1 flax egg (1 tbsp ground flaxseed + 3 tbsp water, let sit for 5 minutes)
  • ¼ cup unsweetened applesauce
  • ¼ cup mashed banana (adds extra sweetness)

Q2. Can I use regular yogurt instead of Greek yogurt?

Yes, but since regular yogurt is thinner, reduce the milk slightly to maintain the right batter consistency.

Q3. Can I make these muffins gluten-free?

Absolutely! Swap the whole wheat flour for:

  • A 1:1 gluten-free flour blend
  • Oat flour (but muffins may be slightly denser)

Q4. How do I store these muffins?

  • At room temperature: Store in an airtight container for up to 3 days.
  • In the fridge: Keep for up to a week, but let them come to room temp before eating.
  • In the freezer: Store in a freezer-safe bag for up to 3 months. Thaw overnight or microwave for 20-30 seconds before eating.

Q5. Can I use a different sweetener instead of honey or maple syrup?

Yes! You can use:

  • Coconut sugar (same amount)
  • Date syrup
  • Mashed banana (reduce the milk slightly)

Q6. Can I use chocolate chips instead of raisins?

Definitely! Swap raisins for chocolate chips, dried cranberries, or chopped nuts for a fun variation.

Q7. Why are my muffins dense or dry?

  • Overmixing the batter can make them tough. Stir until just combined.
  • Not enough moisture—Make sure you’re using full-fat Greek yogurt and soaking the raisins.
  • Overbaking—Check for doneness at 18 minutes with a toothpick.

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Fluffy Greek Yogurt Muffins fresh out of the oven

Healthy Greek Yogurt Muffins – No Refined Sugar!

Looking for a healthy muffin recipe that’s easy to make and packed with flavor? These Greek Yogurt Muffins are naturally sweetened, made with whole wheat flour, and have a soft, fluffy texture thanks to Greek yogurt.
No ratings yet
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Course Breakfast, brunch, Dessert, Snack
Cuisine Eastern Europe
Servings 12 muffins
Calories 160 kcal

Equipment

  • 1 mixing bowl
  • 1 muffin baking tray

Ingredients
  

  • 1 ½ cups whole wheat flour
  • 1/2 cup rolled oats
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp cinnamon
  • pinch of salt
  • 1/2 cup plain Greek yogurt (or kefir)
  • 1/4 cup maple syrup (or honey)
  • 1/4 cup melted coconut oil (or melted butter)
  • 2 eggs
  • 1 tsp vanilla extract
  • 1/2 cup milk (any type)
  • 3/4 cup raisins (soaked in warm water for 10 minutes, then drained)

Instructions
 

  • Preheat oven to 350°F (175°C) and line a muffin tin.
  • In a bowl, whisk together flour, oats, baking powder, baking soda, and cinnamon.
  • In another bowl, mix Greek yogurt, maple syrup, coconut oil, eggs, vanilla, and milk until smooth. Combine the wet and dry ingredients, stirring gently.
  • Fold in the raisins (drain them first if they were soaked).
  • Divide the batter into muffin cups, filling each about ¾ full.
  • Bake for 18-22 minutes or until a toothpick comes out clean.Let cool for 5 minutes before removing from the pan.

Notes

  • The calories and macronutrients may vary slightly depending on ingredient brands.
  • If using low-fat Greek yogurt, total fat will be lower.
  • Adding chocolate chips or nuts will increase calories & fat content.

Nutrition

Serving: 1muffinCalories: 160kcalCarbohydrates: 25gProtein: 4gFat: 5gSaturated Fat: 3gCholesterol: 30mgFiber: 2gSugar: 10gCalcium: 60mg
Keyword eggs, greek yogurt, guilt-free, healthy, healthy breakfast, kefir, kid friendly, sugar-free, vegetarian
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